| RGAP LOCUS ID |
LOC_Os01g60810 |
| RAP-DB ID |
Os01g0823500 |
| Function |
DUF623 domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
6 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.432 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.67 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
8 |
| confidence value |
0.5 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
OFP |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsOFP6 |
| Function assigned as per literature |
OsOFP6 plays important roles in the determination of plant height, grain size, and lateral root development, and in the responses to abiotic stresses. |
| Subcellular localization as per literature |
Nucleus and endoplasmic reticulum |
| Cells used for localization experiment |
Arabidopsis protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
29048565 |
| Reference of localization |
https://academic.oup.com/jxb/article-abstract/68/17/4885/4259601?redirectedFrom=fulltext |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
5 |
| Number of PAT7 |
4 |
| Number of Bipartite |
1 |
| Basic residues % |
0.169 |
| NLS score |
2.4 |
| Protein Sequence |
>LOC_Os01g60810.1 protein
MGRHKFRLSDMIPNAWFFKLRDMRAARGGAGAGGGGASHGGVVTQSSVAVSRAGRACRPLPNTPRHGALSLPHRASYYYTPRAGDLLVGSPLHPKCSDTQ
FPPLQLSPPRKSRRRHRRRSVKLAPSVSGSSVLSSPVSTGCRCGRKPELVVVEAPDTPPCRRDKFVGYNDDDDDEEEEEVEFKKPTVAVAACDELDGKVI
TSATDIIIDLRTEKRPDKVLPPIVTKPARRELDGCDLEEKHIDVVRRASAKKPTTLLEQSKPRRSVSSARRLKTRANTPRIVAKKSKPPPPPPPAAARSP
APTTKPPLAESFAVVKSSRDPRRDFRESMEEMIAENGIRTAADLEDLLACYLSLNAAEYHDLIVDVFEHIWANLADIKM |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoskeleton |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleolus |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
anatomical structure morphogenesis |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
cell growth |
|
| Presence of Splice variants |
No |
