LOC_Os01g60660

Expression Profile

RGAP LOCUS ID LOC_Os01g60660
RAP-DB ID Os01g0821800
Function methionyl-tRNA synthetase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4.5

2) CELLO Prediction
localization Cytoplasmic
score 1.131

3) NUCPRED Prediction
localization Non Nuclear
score 0.21

4) Y-Loc Prediction
localization Cytoplasm
score 75
confidence value 0.17
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsARC
Function assigned as per literature OsARC is an Aminoacyl-tRNA synthetases (aaRSs) which enhances the function of OsERS1 in ligating glutamate to tRNAGlu
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29720556
Reference of localization http://www.plantphysiol.org/content/177/2/728.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.125
NLS score 0.47
Protein Sequence >LOC_Os01g60660.1 protein
MAAAAADFAASKRAMAYALCKHLSLDPNTISSTSIEESDIATLFSHIVKSSEDEVLKWVEFSSNFVGKCGEQHALLGNLNQDLSQKSVLLGNGFKPSVAD
IVVFATIQVFVSHLGENELQKYPHVLRWMDYIQNIVDFGTTVQKVNLTKSVFDPPSHPKKADKGDTDPSSKKVVSGQKNVGKSDANVDSKKAAPENKAPE
NKANPTPAKNNKPSGDKKKAQEKSAGKPNEGVADKAPQKTAEKDSECNVSILNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVSGLAKFFSPEELV
NRHVVLITNVKPGKLRDVMSAGLVLCASNQDHTVVEPLIPPEGAKPGERISFAGFDGKPEDVLNPKKKQLDKITPDLHTDGNGIATYRGVPFTTSAGPCR
SSVPNASIK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term translation
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Cellular comBiological Processonent
GO Term cytosol
5
GO Category Molecular Function
GO Term RNA binding
Presence of Splice variants YES