LOC_Os01g59920

Expression Profile

RGAP LOCUS ID LOC_Os01g59920
RAP-DB ID Os01g0814800
Function cysteine synthase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Chloroplast
score 3.45

3) NUCPRED Prediction
localization Non Nuclear
score 0.04

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.89
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GRA78
Function assigned as per literature GRA78 is involved in chloroplast development at the early seedling stage of rice.
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30824011
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945218313463
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.094
NLS score -0.47
Protein Sequence >LOC_Os01g59920.1 protein
MAMAMASPPACPFLLSLSAGATAISTVSAAYGSVSAPRAPLFLLASPRPVPPRRPLAAGSSSPKAAAPAAVEIPEEYVDDVDAVNIAQDVTQLIGKTPMV
YLNNVVDGCVANIAAKLEYMGPCRSVKDRIGLSMINDAEEKGLIFPNKTILVEPTTGNTGIGLASVAAARGYKLIATVPSSIDVERCVLLRAFGAEIVLT
DPNKGLKGALDKAEEIVSKTPNAYMFQQFNNSANSEIHFQTTGPEIWEDTLGTVDILVASIGTGGTITGTGRYLKMMNKDIKVIGVEPAETSVISGDNAG
YIPSILDVQLLDEVVKVTTTEAVDVARELALKEGLLVGISSGAATVAAINVAKRPENAGKLIAVIFPSFGERYISSILFRPIYDSVRRMRKR

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Biological Process
GO Term photosynthesis
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No