LOC_Os01g58750

Expression Profile

RGAP LOCUS ID LOC_Os01g58750
RAP-DB ID Os01g0801700
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 1.853

3) NUCPRED Prediction
localization Non Nuclear
score 0.74

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.15
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGCD1
Function assigned as per literature OsGCD1 is essential for rice fertility and is required for dorsal-ventral pattern formation and endosperm development
Subcellular localization as per literature Mitochondria
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28585692
Reference of localization https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.14625
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 1
Number of Bipartite 2
Basic residues % 0.174
NLS score 2.07
Protein Sequence >LOC_Os01g58750.1 protein
MLALRKTLLHGRLPAAPPAAAAAAIASRIPALLRRLSSSPGDGQGGDEWGSSWSTGITKEHFDGSDAAVGRPVTSPSKPVSPELAAVRAMDEEDEIFRAM
ERDNREAKAYVDSWGDRMRETCELLKQVREPGSRGSYLKDSEKQEMYRLHKEDPETYTVERLAKDFRVMRQRVHAILWLKEMEEEEERKLGKPLDDSVEV
LLDSCPEFFNSHDREFHVASLPYKPDFKVMPEGWDGTTRDPDEVLYEISMKEDQMLYEEFVQRLQFNKKKVAGEVKCHKYSRRRPDDGWTYMVEKLGAQS
KRGSGGGWKFASLPDGSSRPLNDMEKMYVKRETPKRRRRIMAPFK

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No