LOC_Os01g57890

Expression Profile

RGAP LOCUS ID LOC_Os01g57890
RAP-DB ID Os01g0788800
Function Homeobox domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization PlasmaMembrane
score 1.571

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.99
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category HB/HD-ZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OSTF1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.102
NLS score 0.15
Protein Sequence >LOC_Os01g57890.1 protein
MEMNQQHNEGNESFVALMNGFAGDGTATLPNDGEQRMSIPARELFAAIEADSGLLPVNSSNTNEKRKRRLQRLTGKQSEVLEGFFSICGHPDDGQKRHLS
ETTGLGLDQVKFWFQNKRTQVKTMCWKEENYKLSVENEILRDENRRVKIAHCTAVCLTCCNSSVQNQLAVEMERLMGQSEWLQQEIARSNGTPPAANLAF
QLNSSADYVFSGQHDQQMIAELAKNAMHALIILAESHVALWFPVPGCSYEVLNKMAYDQAYPGDNSANAIGFKTEATRAVSMVMMDYKSVVDFLMDPYNY
RTFFPEVISGAVTNRIYTWPTSDGYNGVIQLMTVEMMFPSPLVPARKCTFLRYCNVLNEGLVVVIDVSLDDGSIFSKCRKMPSGFLIQSIRPNSCKVTAI
EHVLADDTGVHELYQPCMNGLVFGARRWVATMARQSARMRDVHHNKTAPQVSTKGRKNLMKLADDLLASFAGGIAATGGGTWTVVIGAGTEKDIRVAYRR
TTEGSSSYNAILSVTASLRLPLPMRKTFDLLRNLTHRCKWDVLVHGSVVKEEVTIARGVGNDDTVTVLHCKRAGREDRGRTMILQNNGYDASGSFMVYSQ
IDSELMNTMVLSPSDLPPGRGGPSLYPTGFSLLPDVEAAQDSSGIALGEVGGTLMTMGFQIPVKLASGDRMYSRSAASAIRLMTDTIALVKKTLMNEHSG
IYGVSPFHP

GO Analysis
1
GO Category Biological Process
GO Term cell differentiation
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term reproduction
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Biological Process
GO Term embryo development
8
GO Category Biological Process
GO Term biosynthetic process
9
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
10
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES