LOC_Os01g57210

Expression Profile

RGAP LOCUS ID LOC_Os01g57210
RAP-DB ID Os01g0780400
Function katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4

2) CELLO Prediction
localization Nuclear
score 1.014

3) NUCPRED Prediction
localization Non Nuclear
score 0.29

4) Y-Loc Prediction
localization Cytoplasm
score 99
confidence value 0.96
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsKTN80c|OsWD40-26
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.13
Protein Sequence >LOC_Os01g57210.1 protein
MDPEKRGYRLQEFVAHDAEVRSLSIGKKSSRVFITGGSDRKVNLWAIGKQTPLLSLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG
HRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCIDFHPQEFL
LATGSADRTVKFWDLETFELIGSAGPEATGVRSTVFHPDGKTLFCGLDQSLKVFSWEPVRCHDVVDMGWSNLADLSIYEGKLLGCSYHECRVGVWVADIS
LIGPYALGVLPKANFFAELVHSLDDNPSKTIDTTAKSIPALATTHPKNLYKVKETGTAESGIRGSNLTPASMDKTKRDKSGATPRRPDSSFKSSIQSSTP
MRRMKAADSPYTNRKTVERNFAQRDASLASRTGTANNSSTVKKGHLAESVSVKDIYTTPQTVSVPVVMPRDILEDKTAGSISGGIRGRAAVADDFHAPVH
SRKLSVNSFVGDSVNSTKSMLTDPDVCSEGFSGLKFSFGLTPYYKKEEYDNVDKVDSMDKGDNTQMTEKLDRTVSLEHQLQSNDTSEPPCSTTETTKVKY
VRGVAVPLGKTKSLVERWEKREATNVECSPPTGSCGDRAVRSDGPSSFSAEPSQAYEKDLSTIDEAMIPINLMQNHDEFINAVKSRLTKLEMMRHVFDQN
GIKGAIAAVAKLPDNAVLADVVSTLKGKLDLFNLDIFLSFLPVLAGLLTSKAERHAIVSLELLLDLIKIFGPVIRSTLSAHSAVGVDIQAEQRLQRCSRC
FNHLQKIQQVLHPLIMRGGQSAQLAQELNLSLQDLVVI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term response to endogenous stimulus
Presence of Splice variants YES