LOC_Os01g57110
| RGAP LOCUS ID | LOC_Os01g57110 |
| RAP-DB ID | Os01g0779400 |
| Function | SNF2 family N-terminal domain containing protein, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | Nuclear |
| score | 13 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 4.308 |
3) NUCPRED Prediction |
|
| localization | Nuclear |
| score | 0.93 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 100 |
| confidence value | 1 |
| Number Of Software Predicting Nucleus | 4 |
| Seed Specific | No |
| Transcription factor category | SNF2 |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | ALT1 |
| Function assigned as per literature | Role in improving the tolerance of rice plants to alkaline stress. |
| Subcellular localization as per literature | Nucleus |
| Cells used for localization experiment | onion epidermal cells |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 25473841 |
| Reference of localization | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0112515 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 1 |
| Number of PAT7 | 0 |
| Number of Bipartite | 1 |
| Basic residues % | 0.1 |
| NLS score | 0.33 |
| Protein Sequence | >LOC_Os01g57110.1 protein MEEAAAAAADFDGGFGGAGEDNLSMPLGDFMAFLDNEDWKEQQHEGNQGLEMPVDSTSSENAFQNHEEIFENKENWSNYSHTDPSHSQMDVMVELNNGGE SFDHSEDTSYRLLSNDFLENSRNGNPEMHLPMDALNHAKTVDEEIVPPYEDYTNGLYYDSGCDMFAEQSGLSEVKCEGTGPMLGNSEQEGNHFTSVPMFD HSAVIPDIPYTELNIGDVPGSMQNGNGSCLTVQGEYLQGEYQEYPQPDYGSFDMANEIVLHDLPQNNQSYELEQLPQNICESSSMQVGSPDQYCDDTSLS DYYMDDVSSIESMSSEQNRSEDICFRSESSTDSSPVPSSRNSTTEDADKYFGDAPKHLQNSMFPVSTQHQHSFMNSSDPMHPTFHKKYDIPRNGSSSILG NSSRNCFSLDSNRDSDLCILEGSRSLASGHVLPPQGLQHNFQQSVCANPNLPRFGGRYRPHEERMTLRLALQDISQPKSEANPPDGVLAVPLLRHQKIAL SWMVQKERNGSSCSGGILADDQGLGKTVSTISLILTERSPVPSSAVKQEPCEAVTLDDDDEDDDAEPHLKKPALAHLADTCKPEATSSTIKTENPIANVK ARPAAGTLVVCPTSVLRQWADELRNKVTSKANLTFLVYHGSNRTKDPNDLTKYDVVLTTYSIVSMEVPKQSSPDSDDEEKGKPDRYGAPVGSSGSKKRKT SSSKKNKSGSTPESKLPEKPLAKVAWFRVILDEAQSIKNYRTQVARACWGLRAKRRWCLSGTPIQNAVEDLYSYFRFLRYDPYAEYKKFCFMIKTPISRN PITGYKKLQVVLKTVMLRRTKATMLDGKPIISLPPKTVSLKTVDFTSEERAFYNTLEAESREQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPHLVRGH ESTSSWMSSLEMAKKLPVERQQSLLVCLQSCSAICALCNDAPEDAVVTICGHVFCNQCILEQLTGDDSVCPVSNCRVRLNSTSLFSRGTLECALSRSTCE FLSDDSCEDMVQGKQPRFDSSYASSKVRAALDILLSLPKLDLTHMSDDKNKIVHPDKINGNSTPSEYAGTKITEKAIVFSQWTRMLDLVEVHLKSSHLSY RRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKREM VASAFGEDKSGAHQTRLTVEDLNYLFMV |
GO Analysis |
|
| Presence of Splice variants | YES |