LOC_Os01g56940

Expression Profile

RGAP LOCUS ID LOC_Os01g56940
RAP-DB ID Os01g0777300
Function flap endonuclease, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.258

3) NUCPRED Prediction
localization Nuclear
score 0.91

4) Y-Loc Prediction
localization Nuclear
score 98.8
confidence value 0.4
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsEXO1
Function assigned as per literature OsEXO1 plays an important role in both cell proliferation and UV-damaged nuclear DNA repair pathway under dark conditions.
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 18231866
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-008-9288-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.129
NLS score 0.1
Protein Sequence >LOC_Os01g56940.1 protein
MGIQGLLPQLKSIMAPIGVEALKGQTVAVDTYSWLHKGALSCGDRLCKGLPTTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENL
ERAKEHESAGNSRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITEDSDLIPFGCSRIIFKMDKFGQGVEFHITRL
QRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG
SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFEGKTESSALAFDKVHLNRESSAPSNGKKKLDLPVQRNVLTNYFCLASLEAKRKFRAPKVTPKQQVLN
GSLPSPRIEDSGTPDLIEDTSLPSNNIQVYQCSSEHFSSGTPLDDSINTASQCSSERVRCDIPRDDSASVSPQCSHDIGSDPAEDPDIEGNKVKVNFCNR
STIPTGSFLEGTLPGISDPFLDSHNTEPSRAAPRYAEKSNVVSANRNITVRSSYFKTVNKRVCTNQGEDECHDEDNCETGNYTLPGDQQRSSGGILKRRK
FSDPQNFEDGMFQPTSPHESPPVADKGCDSDSHDGINTNSEGKFGCNVAHVNKYSGIAEKSMDKFAALISSFRYAGSRASGLRAPLKDVKNTLPVRSVLR
PPEQRFGCTAKKTTRVPLQSRFSSDATNSTDVPDLSTFAYRPTTASAHSDQGKITSKATDAAAGPPDLRTFAYAPTRSTTSRFDQSENTRKAMCTADSPP
DISTFEYKPMKSAVRRSDGSKFSGAALKAARRTSRS

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term response to stress
3
GO Category Biological Process
GO Term DNA metabolic process
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Molecular Function
GO Term nuclease activity
Presence of Splice variants No