LOC_Os01g56350

Expression Profile

RGAP LOCUS ID LOC_Os01g56350
RAP-DB ID Os01g0769900
Function PTAC12, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Nuclear
score 1.395

3) NUCPRED Prediction
localization Non Nuclear
score 0.64

4) Y-Loc Prediction
localization Nuclear
score 71.89
confidence value 0.11
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TCM1
Function assigned as per literature CM1 is essential for proper chloroplast development and maintaining PEP activity under cold stress
Subcellular localization as per literature chloroplasts
Cells used for localization experiment tobacco (Nicotiana tabacum L.) leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29505628
Reference of localization https://dl.sciencesocieties.org/publications/tpg/abstracts/11/1/160065
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 3
Number of Bipartite 4
Basic residues % 0.127
NLS score 2.97
Protein Sequence >LOC_Os01g56350.3 protein
MASCSRTWLLPGMAPQATAQTVPRPLQSLKVFAGLPHRRRVLFSGVSSRTRRGRIRSVKDDSLHFDPSKIEAPPYSSYFDSTSGQLEPASGARASIPGQE
YWPEGTASRVRAARAPAPVGESAGTPSFGKKPGSRRKGYKEQVASATAGRGTETSGDEGESVVAIEASSDETLEETKDSLDEYVVYEMPKEENLSEYEMD
KMMGRPHPFVDPQKAMSVGEPKSSEELWWNWRRKSEENEMWSRWQRRRPDVDTVFAKAMAETGQIKIFGDHPTRTEAALAKARRHLFKEERLEAEQRRLE
EIGPIAYYSEWVEAYKNKDTSREAVQKHFEETGEDENTQLITMFQHQTAGEFRIMMGTDVRIQRDPLAMRMREDQIKQIWGGDPVYPTINYVHDPDEVAD
YRGPEFHEPTPEVVPYLMEHGIMITKEELYARLNEEMEDINQDITYLPEVRDPMATAVDIGEHSYNEDSDDDEEDADKVVAQPESLEDDEDDGDDAEDAE
GKVSRNWSVLKTTGQAENPKEKSKKDQLSLKEAIADSENLTDFLMDFEEDE

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term plastid
3
GO Category Cellular comBiological Processonent
GO Term intracellular
4
GO Category Biological Process
GO Term cellular component organization
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term biosynthetic process
Presence of Splice variants YES