RGAP LOCUS ID | LOC_Os01g56190 |
RAP-DB ID | Os01g0767700 |
Function | HVT1, putative, expressed |
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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localization | Nuclear |
score | 8 |
2) CELLO Prediction |
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localization | Nuclear |
score | 2.766 |
3) NUCPRED Prediction |
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localization | Nuclear |
score | 0.8 |
4) Y-Loc Prediction |
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localization | Nuclear |
score | 99.38 |
confidence value | 0.7 |
Number Of Software Predicting Nucleus | 4 |
Seed Specific | No |
Transcription factor category | |
Experimental evidence for subcellular localization |
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Published gene name (updated 1 January 2020) | RNAhA |
Function assigned as per literature | |
Subcellular localization as per literature | NA |
Cells used for localization experiment | |
NUCLEAR or Not Nuclear | |
PMID | |
Reference of localization | |
Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
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Number of PAT4 | 0 |
Number of PAT7 | 1 |
Number of Bipartite | 0 |
Basic residues % | 0.122 |
NLS score | -0.13 |
Protein Sequence | >LOC_Os01g56190.1 protein MVRRGRKGKDAAAGAGGTGGRGGGAGRGGGRGGSGGGGGGGGVREATLVRVSKVLEDFQASDAQVYKFEPGISKQERAAIHEMCRKMGMISKSSGNGERR CLSVYKRKQNQGLETEEGPSHLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNSSDKAVKIQWKPDGAFCRPALRKPDILKKVEMLASKVNKSEQLRKIV QDRSKLPISSYKDAISSTLENHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIVCTQPRRISAISVAERISAERGESVGDTVGYKIRLESKGGKNSS IMFCTNGVLLRLLIGRVTNISKEQNQKRSFDDAVTGITHIIVDEIHERDRFSDFMLAILRDLLPLYPHLRLVLMSATIDAERFSNYFSGCPFIQVPGFTH PVKTFYLEDVLSILQSVGDNHLDPTTDDLKQSSLLTDDYKSSMDEAINLALDNDEFDPLLELISAEQNQEIFNYQHSETGVTPLMVLAGKGQVGDICMLL SFGVDCSTRDHDGKSALGWAEQGNQQEVCEVIKKHMECGSAKLTEENELLNKYLATINPEHIDTVLIERLLRKICVDSNEGAILVFLPGWEDINQTRERL LASPFFQDSSKFLVLSLHSMIPSSEQKKVFKRPPAGSRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQGRAGRCQ PGTCYHLYSRFRAASLLEYQIPEIKRMPIEELCLQVKLLDPNCRIADFLRKTLDPPIPETVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTSKML LFGILMNCLDPALTLACAADYRDPFLLPMAPDERKRAAAAKVELASLYGGYSDQLAVVAAMDCWRRAKDRGQEAQFCSKYFVSSNTMNMLSNMRKQLQNE LAQRGFVPVDASACSLNARDPGIIRAVLMAGAYPMVGRLLPPRKNTRRAVIETASGAKVRLHPHSCNFNLSFRKTSGNPLVIYDEITRGDGGMYIKNSSV VGSYPLIILATEMVVAPPEDDDSDEEDGDSSEDETEKVTLGQHKEIMSSPDNSVSVVIDRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVLPPDL GATMYAIACILSYDGLPAMITSDDVATSQGSNQSSAESSRFSQGRRVGYIPPGGFLMSLLSDKPLNAPHFQKSFNHPDGASGHIRSSRTSVGRFDQSRHP QRNNSGPGSSAARTFKRQRNGAQ |
GO Analysis |
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Presence of Splice variants | No |