LOC_Os01g56190

Expression Profile

RGAP LOCUS ID LOC_Os01g56190
RAP-DB ID Os01g0767700
Function HVT1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization Nuclear
score 8

2) CELLO Prediction

localization Nuclear
score 2.766

3) NUCPRED Prediction

localization Nuclear
score 0.8

4) Y-Loc Prediction

localization Nuclear
score 99.38
confidence value 0.7
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020) RNAhA
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis

Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.13
Protein Sequence >LOC_Os01g56190.1 protein
MVRRGRKGKDAAAGAGGTGGRGGGAGRGGGRGGSGGGGGGGGVREATLVRVSKVLEDFQASDAQVYKFEPGISKQERAAIHEMCRKMGMISKSSGNGERR
CLSVYKRKQNQGLETEEGPSHLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNSSDKAVKIQWKPDGAFCRPALRKPDILKKVEMLASKVNKSEQLRKIV
QDRSKLPISSYKDAISSTLENHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIVCTQPRRISAISVAERISAERGESVGDTVGYKIRLESKGGKNSS
IMFCTNGVLLRLLIGRVTNISKEQNQKRSFDDAVTGITHIIVDEIHERDRFSDFMLAILRDLLPLYPHLRLVLMSATIDAERFSNYFSGCPFIQVPGFTH
PVKTFYLEDVLSILQSVGDNHLDPTTDDLKQSSLLTDDYKSSMDEAINLALDNDEFDPLLELISAEQNQEIFNYQHSETGVTPLMVLAGKGQVGDICMLL
SFGVDCSTRDHDGKSALGWAEQGNQQEVCEVIKKHMECGSAKLTEENELLNKYLATINPEHIDTVLIERLLRKICVDSNEGAILVFLPGWEDINQTRERL
LASPFFQDSSKFLVLSLHSMIPSSEQKKVFKRPPAGSRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQGRAGRCQ
PGTCYHLYSRFRAASLLEYQIPEIKRMPIEELCLQVKLLDPNCRIADFLRKTLDPPIPETVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTSKML
LFGILMNCLDPALTLACAADYRDPFLLPMAPDERKRAAAAKVELASLYGGYSDQLAVVAAMDCWRRAKDRGQEAQFCSKYFVSSNTMNMLSNMRKQLQNE
LAQRGFVPVDASACSLNARDPGIIRAVLMAGAYPMVGRLLPPRKNTRRAVIETASGAKVRLHPHSCNFNLSFRKTSGNPLVIYDEITRGDGGMYIKNSSV
VGSYPLIILATEMVVAPPEDDDSDEEDGDSSEDETEKVTLGQHKEIMSSPDNSVSVVIDRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVLPPDL
GATMYAIACILSYDGLPAMITSDDVATSQGSNQSSAESSRFSQGRRVGYIPPGGFLMSLLSDKPLNAPHFQKSFNHPDGASGHIRSSRTSVGRFDQSRHP
QRNNSGPGSSAARTFKRQRNGAQ

GO Analysis

Presence of Splice variants No