LOC_Os01g55974

Expression Profile

RGAP LOCUS ID LOC_Os01g55974
RAP-DB ID Os01g0765000
Function deoxycytidylate deaminase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Chloroplast
score 1.516

3) NUCPRED Prediction
localization Non Nuclear
score 0.26

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.49
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ST2
Function assigned as per literature ST2 is involved in chloroplast development in rice
Subcellular localization as per literature MITOCHONDRIA
Cells used for localization experiment onion epidermal cells and rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25438698
Reference of localization https://www.sciencedirect.com/science/article/pii/S1673852714001040?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.47
Protein Sequence >LOC_Os01g55974.1 protein
MASARDLAVASISAAVGAAAAAAALRFLSSYGASSAKQRSPPTPCAEHLAVNGCAAERPPVQSPFDPAKREGYISWDDYFMAIAFLSAKRSKDPNRQVGA
CLVSQEGIILGIGYNGFPRGCSDNKLPWAKKSAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNECAKIIIQSGVSEVIYFVEKRIDNSD
YVYVASHKLLSMAGVKVRKHQPQMSQIPIKFQEPRNGEPSMNAASIFS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term hydrolase activity
4
GO Category Molecular Function
GO Term binding
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES