LOC_Os01g54620

Expression Profile

RGAP LOCUS ID LOC_Os01g54620
RAP-DB ID Os01g0750300
Function CESA4 - cellulose synthase, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 10

2) CELLO Prediction
localization PlasmaMembrane
score 3.792

3) NUCPRED Prediction
localization Non Nuclear
score 0.17

4) Y-Loc Prediction
localization Nuclear
score 62.48
confidence value 0.41
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCesA4|Bc7|bc11
Function assigned as per literature OsCesA4 is involved in cell wall biosynthesis in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Nicotiana benthamiana epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28947492
Reference of localization http://www.plantcell.org/content/29/10/2433#ref-list-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.106
NLS score 0.7
Protein Sequence >LOC_Os01g54620.1 protein
MMESGVPPCAACGDDAHAACRACSYALCKACLDEDAAEGRTTCARCGGEYGAPDPAHGQGAVVEEEVEESHEPAAGGVRERVTMASQLSDHQDEGVHART
MSTHARTISSVSGVGSELNDESGKPIWKNRVESWKEKKKEKKASAKKAAAKAQAPPVEEQIMDEKDLTDAYEPLSRIIPISKNKLTPYRAVIIMRLVVLG
LFFHYRITNPVYSAFGLWMTSVICEIWFGFSWILDQFPKWCPINRETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEK
ISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKIHPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWIMQDGT
PWPGNNPRDHPGMIQVFLGETGARDFDGNELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPSVGRD
VCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGLQGPVYVGTGCCFYRQALYGYGPPSLPALPKSSVCSWCCCCCPKKKAEKSEKEMHRDSRREDLE
SAIFNLREIDNYDEYERSMLISQMSFEKSFGLSSVFIESTLMENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGW
RSIYCMPIRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAA
TIWFLGLFISIIVTSVLELRWSGIGIEDWWRNEQFWVIGGVSAHLFAVFQGILKMIAGLDTNFTVTAKATDDTEFGELYVFKWTTVLIPPTSILVLNLVG
VVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPFIGSSETTTTNSCANFDC

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to biotic stimulus
3
GO Category Molecular Function
GO Term transferase activity
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term cellular process
8
GO Category Biological Process
GO Term lipid metabolic process
9
GO Category Biological Process
GO Term secondary metabolic process
10
GO Category Cellular comBiological Processonent
GO Term cell wall
11
GO Category Biological Process
GO Term carbohydrate metabolic process
12
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No