LOC_Os01g54600

Expression Profile

RGAP LOCUS ID LOC_Os01g54600
RAP-DB ID Os01g0750100
Function WRKY13, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 2.443

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.97
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category WRKY

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsWRKY13|WRKY13
Function assigned as per literature OsWRKY13 mediates resistance by simultaneous direct or indirect activation of the genes in the SA-dependent pathway and suppression of the genes in the JA-dependent pathway
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion Epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 17506327
Reference of localization https://apsjournals.apsnet.org/doi/10.1094/MPMI-20-5-0492
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.114
NLS score -0.22
Protein Sequence >LOC_Os01g54600.1 protein
MAAGEEVMDRSTSAEDGYCSAGTDSPRAESVDEQGAAEESSPRGGQKRELPSPSASPSSPLPPAAKRSRRSVEKRVVSVPIAECGDRPKGAGEGPPPSDS
WAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRADPTVLLVTYSFEHNHPWPQPKSSSCHASKSSPRSTAPKPEPVADGQHPEPAENESSASAE
LEVPEPEPEQESEPVVKQEEEQKEEQKAVVEPAAVTTTVAPAPAVEEEDENFDFGWIDQYHPTWHRSYAPLLPPEEWERELQGDDALFAGLGELPECAVV
FGRRRELGLAATAPCS

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No