LOC_Os01g54550

Expression Profile

RGAP LOCUS ID

LOC_Os01g54550

RAP-DB ID

Os01g0749300

Function

HSF-type DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

4.257

3) NUCPRED Prediction

localization

Nuclear

score

0.95

4) Y-Loc Prediction

localization

Nuclear

score

100

confidence value

0.98

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

HSF

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsHsfA4a|OsHsfA4b

Function assigned as per literature

OsHsfA4a confers Cd tolerance by upregulating MT gene expression in planta.

Subcellular localization as per literature

nucleus and cytoplasm.

Cells used for localization experiment

yeast and plant cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

20028842

Reference of localization

http://www.plantcell.org/content/21/12/4031.long

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.116

NLS score

0.78

Protein Sequence

>LOC_Os01g54550.1 protein
MEGGGGGGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIH
RRKPIFSHSSHSQGAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKAPGFLSSFVQQQDHHR
KKRRLPIPISFHEDANTQENQIMPCDLTNSPAQTFYRESFDKMESSLNSLENFLREASEEFGNDISYDDGVPGPSSTVVLTELHSPGESDPRVSSPPTRM
RTSSAGAGDSHSSRDVAESTSCAESPPIPQMHSRVDTRAKVSEIDVNSEPAVTETGPSRDQPAEEPPAVTPGANDGFWQQFLTEQPGSSDAHQEAQSERR
DGGNKVDEMKSGDRQHLWWGKRNVEQITEKLGLLTSTEKT

GO Analysis

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Biological Process
GO Term	biological_process

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants