LOC_Os01g53220

Expression Profile

RGAP LOCUS ID LOC_Os01g53220
RAP-DB ID Os01g0733200
Function HSF-type DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Cytoplasmic
score 1.42

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Nuclear
score 99.93
confidence value 0.82
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category HSF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHsfC1b
Function assigned as per literature OsHsfC1b plays a role in ABA-mediated salt stress tolerance in rice
Subcellular localization as per literature Majorly nucleus and less in cytoplasm
Cells used for localization experiment Arabidopsis mesophyll cell protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 22616023
Reference of localization https://academic.oup.com/aobpla/article/doi/10.1093/aobpla/pls011/175648
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.136
NLS score 1.16
Protein Sequence >LOC_Os01g53220.1 protein
MMGGECKVHQLQAAGDGGPGAVAPFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESF
LRGQAQLLPRIVRKKKKGGAAPGCRELCEEGEEVRGTIEAVQRLREEQRGMEEELQAMDQRLRAAESRPGQMMAFLAKLADEPGVVLRAMLAKKEELAAA
GNNGSDPCKRRRIGADTGRGGVATGGDAAEMAQSRGTVPFPFSVLGQVFY

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No