LOC_Os01g53000

Expression Profile

RGAP LOCUS ID LOC_Os01g53000
RAP-DB ID Os01g0730300
Function trehalose synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Nuclear
score 1.614

3) NUCPRED Prediction
localization Non Nuclear
score 0.53

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.27
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTPS3
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 4
Number of Bipartite 0
Basic residues % 0.116
NLS score 1.24
Protein Sequence >LOC_Os01g53000.1 protein
MFSRSYTNLVDLANGNLSALDYGGGGGGGGGGNGAGGRPPRARRMQRTMTTPGTLAELDEERAGSVTSDVPSSLASDRLIVVANTLPVRCERRPDGRGWS
FCWDEDSLLLHLRDGLPDDMEVLYVGSLRADVPSAEQDDVAQALLDRFRCVPAFLPKDVLDRFYHGFCKQTLWPLFHYMLPFTSDHGGRFDRSQWEAYVL
ANKLFSQRVIEVLNPEDDYIWIHDYHLLALPSFLRRRFNRLRIGFFLHSPFPSSELYRSLPVRDEILKSLLNCDLIGFHTFDYARHFLSCCSRMLGIEYQ
SKRGYIGLDYFGRTVGIKIMPVGINMTQLQTQIRLPDLEWRVAELRKQFDGKTVMLGVDDMDIFKGINLKVLAFEQMLRTHPKWQRKAVLVQIANPRGGG
GKDLEEIQAEIDESCRRINAQFSRPGYVPVVIINRALSSVERMAYYTVAECVVVTAVRDGMNLTPYEYIVCRQGFPDLDGSGDDGPRRKSMLVVSEFIGC
SPSLSGAIRVNPWNIDTTAEAMNESIALSENEKQLRHEKHYRYVSSHDVAYWSKSYIHDLERSCRDHFRRRCWGIGLGFGFRVVALDRNFKKLTVDSIVT
DYKNSKSRVILLDYDGTLVPQTTINRTPNESVVKIMNALCDDKKNVVFIVSGRGRDSLEKWFSPCQDLGIAAEHGYFMRWTRDEQWQLNNQCSEFGWMQM
AKPVMNLYTEATDGSYIETKESALVWHHQDADPGFGSSQAKEMLDHLESVLANEPVCVKSGQQIVEVKPQGVSKGFVAEKILSTLTENKRQADFVLCIGD
DRSDEDMFEGIADIMRRSIVDPQTSLYACTVGQKPSKAKYYLDDTNDVLNMLEALADASEETDSQEDAEEITSIPDPE

GO Analysis
1
GO Category Molecular Function
GO Term hydrolase activity
2
GO Category Molecular Function
GO Term transferase activity
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term carbohydrate metabolic process
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term metabolic process
7
GO Category Cellular comBiological Processonent
GO Term cytosol
Presence of Splice variants YES