LOC_Os01g52010

Expression Profile

RGAP LOCUS ID LOC_Os01g52010
RAP-DB ID Os01g0717700
Function alliin lyase precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Chloroplast
score 1.455

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.18
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTARL1
Function assigned as per literature OsTARL1 plays a prominent role in local auxin biosynthesis in rice
Subcellular localization as per literature Endoplasmic reticulum
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31081210
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/jipb.12820
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.103
NLS score -0.47
Protein Sequence >LOC_Os01g52010.1 protein
METGRHRSQSLGSAGLAFHALLCSSLLLNAVFFAHHLLRSSPTATPERLGDGLSWALQAAREAEAVAAADCSGHGNVFLDGVTGEDGRPGCECNRCFSGP
DCSVRTPNCTADADSGNPLFLEPYWRRHAAASAVVFSGWHRLSYITTGGRFHSVELDRHIRLLHRAVGNAVVDDKYLVFGAGSMQLINALVYALSPDGNA
DSPPASVVATVPYYPAYKSQTDMFDGREYRWDGTTATWSNNGSRNSTKGFIEFVTSPNNPDTALRKPVLAGSSAIVDHAYYWPHLTHIPAPADEDVMLFT
ASKLSGHAGSRFGWALIRDEKVAKRALSYVEQSIMGASRDTQLRMLKILKVILANLHGKEDIFAFGYDVMRSRWRRLNAVVSRSTRISLQKIPPQYCTYF
NRIKEPSPAYAWVKCEWEEDVDCYETLLAAGIISRSGTLSEAEARYTRMSLLKAQDDFDVLLERITEFVDAEEHGRAPGGSSSM

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term catalytic activity
4
GO Category Molecular Function
GO Term binding
Presence of Splice variants No