LOC_Os01g51610

Expression Profile

RGAP LOCUS ID LOC_Os01g51610
RAP-DB ID Os01g0713600
Function B3 DNA binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.548

3) NUCPRED Prediction
localization Nuclear
score 0.88

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.98
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category ABI3VP1/B3

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLFL1
Function assigned as per literature Regulates flowering time
Subcellular localization as per literature Nucleus
Cells used for localization experiment  onion (Allium cepa) epidermal cells 
NUCLEAR or Not Nuclear NUCLEAR
PMID 17913295
Reference of localization https://www.sciencedirect.com/science/article/pii/S0176161707001794?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.114
NLS score -0.16
Protein Sequence >LOC_Os01g51610.1 protein
MRGEERWQEQPALASHPSRATLRPRGWPRLGLAPTGVGSSCPPAPASELARHLARRAPVSASPPVLPPIKDQGARPPTLAASAAAASSPPPPPPPPIPPL
PPSTSTSAARPTDMAGVTSKRRSSSASTSSSSGDGAAVSDRPRGVTRKRRSGGRCPRPAASLRPAAPRPSSHHTAGLRVILQKELRYSDVSQLGRIVLPK
KEAEAYLPILTSKDGKKSLCMHDLQNAQLWTFKYRYWPNNKSRMYVLENTGDYVRTHDLQLGDSIVIYKDDENNRFVIGAKKAGDQQAATVPQVDEHIST
LFPIFPIAQVDDYLSPMAPQVDISAFVPHADENHEIFDGILNSLPEIPVANVRYSDFFDPFDDGMDMANTLNANANQSASLHVTDDKSGHSLIPNPKSGP
HM

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term reproduction
7
GO Category Biological Process
GO Term post-embryonic development
8
GO Category Biological Process
GO Term embryo development
9
GO Category Biological Process
GO Term cellular process
10
GO Category Biological Process
GO Term lipid metabolic process
11
GO Category Biological Process
GO Term secondary metabolic process
12
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No