LOC_Os01g51430

Expression Profile

RGAP LOCUS ID LOC_Os01g51430
RAP-DB ID Os01g0711600
Function green ripe-like, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 4.704

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Cytoplasm
score 95
confidence value 0.86
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRTH1
Function assigned as per literature OsRTH1 may be an RTE1 orthologue of rice and modulate rice ethylene responses
Subcellular localization as per literature Golgi and ER
Cells used for localization experiment Onion epiermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22451723
Reference of localization https://academic.oup.com/jxb/article/63/11/4151/601312
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.079
NLS score -0.04
Protein Sequence >LOC_Os01g51430.1 protein
MAPNKISSMDAGAAFDDEDASSSNSLQELWPVGEIDPKRARFPCCIVWTPLPIVSWLAPYIGHAGICREDGTVLDFAGSNLVSMDNFAYGSIARYLQLDR
KKCCFPVNLATHVCERSYKHAEAGTAISWDDALQLGMRSFGHKFYNLFTCNCYSFVANCLNRLAYNGSVKWNVLNVAALVWLRGQWVDKMSVVRSFFPFL
TVTCVGILMAGWPFLIGMAAFSSLLIGWFVFAVYCMKDLVC

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Molecular Function
GO Term molecular_function
4
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
5
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
Presence of Splice variants No