LOC_Os01g50940

Expression Profile

RGAP LOCUS ID LOC_Os01g50940
RAP-DB ID Os01g0705700
Function helix-loop-helix DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Cytoplasmic
score 1.207

3) NUCPRED Prediction
localization Non Nuclear
score 0.33

4) Y-Loc Prediction
localization Nuclear
score 99.91
confidence value 0.95
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsOsbHLH010|OsMYL1
Function assigned as per literature Role in the inductive production of sakuranetin during defence responses in rice
Subcellular localization as per literature OsMYL1 was localized along with OsMYC2 in the Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28067270
Reference of localization https://www.nature.com/articles/srep40175
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.123
NLS score 0.71
Protein Sequence >LOC_Os01g50940.1 protein
MSWSETDAALFAAVLGHDAAHHLATTPPHLDAPEGSPSSAELQASLHDLVERQGGAWTYGIFWQESRGAGAASGRAARAVLGWGDGHCRDGAGHGEVGAA
ERSVARKRVLLRLHALYGGGDEDGADYALRLDRVTGAEMYFLASMYFSFPEGSGGPGRALASGRHAWADVDPHPSGSGSAPGWYVRSSLAQSAGLRTVVF
LPCKGGVLELGSVVAIRETPEVLRAIQSAMRAVPAPPEDFMRIFGKDLSPGRPSQPMGCDAPWTPRLVVQTTPVRPAKKEVVKAKPAEPPKSLDFSKANV
QEQAGGQERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPKISKMDKASLLSDAIAYIQELEARLRGDAPVPARADGPAVEVKAMQDEV
VLRVTTPLDEHPISRVFHAMRESQISVVASDVAVSDDAVTHTLMVRSAGPERLTAETVLAAMSRGVSVTTPSP

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
7
GO Category Biological Process
GO Term response to endogenous stimulus
Presence of Splice variants No