LOC_Os01g50030

Expression Profile

RGAP LOCUS ID LOC_Os01g50030
RAP-DB ID Os01g0695100
Function CPuORF25 - conserved peptide uORF-containing transcript, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5

2) CELLO Prediction
localization Cytoplasmic
score 4.299

3) NUCPRED Prediction
localization Non Nuclear
score 0.15

4) Y-Loc Prediction
localization Cytoplasm
score 92
confidence value 0.49
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPEAMT1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.132
NLS score -0.47
Protein Sequence >LOC_Os01g50030.1 protein
MDAAAATAVNGVLEVEERKAQKSYWEEHSKDLTVEAMMLDSRAADLDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELVKTAGHVLAMDFIESVIKKN
ESINGHHKNASFMCADVTCPDLMIEDNSIDLIFSNWLLMYLSDEEVEKLVKRMVRWLKVGGYIFFRESCFHQSGDSKRKVNPTHYREPRFYTKVFKECQA
LDQDGNSFELSVLTCKCVGAYVKSKKNQNQICWLWQKVDSTEDRGFQRFLDNVQYKASGILRYERIFGEGFVSTGGIETTKEFVDRLDLKPGQNVLDVGC
GIGGGDFYMADKYDVHVVGIDLSINMVSFALERAIGRKCSVEFEVADCTKKTYPDNTFDVIYSRDTILHIQDKPSLFKSFFKWLKPGGKVLISDYCKCPG
KPSEEFAAYIKQRGYDLHDVRAYGQMLENAGFHDVIAEDRTDQFLDVLERELAKVEKNKNEFVSDFSQEDYDAIVNGWKAKLQRSSAGEQRWGLFIATK

GO Analysis
1
GO Category Biological Process
GO Term pollination
2
GO Category Biological Process
GO Term response to external stimulus
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Biological Process
GO Term cellular component organization
5
GO Category Biological Process
GO Term anatomical structure morphogenesis
6
GO Category Biological Process
GO Term cell growth
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Biological Process
GO Term cellular process
9
GO Category Molecular Function
GO Term transferase activity
10
GO Category Biological Process
GO Term cell differentiation
11
GO Category Cellular comBiological Processonent
GO Term cytoplasm
12
GO Category Biological Process
GO Term post-embryonic development
13
GO Category Cellular comBiological Processonent
GO Term cytosol
14
GO Category Biological Process
GO Term metabolic process
15
GO Category Biological Process
GO Term lipid metabolic process
Presence of Splice variants No