| RGAP LOCUS ID |
LOC_Os01g49290 |
| RAP-DB ID |
Os01g0686800 |
| Function |
WD repeat-containing protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
6 |
2) CELLO
Prediction
|
| localization |
Extracellular |
| score |
3 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.01 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
99 |
| confidence value |
0.97 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsRACK1A |
| Function assigned as per literature |
RACK1A functions in rice innate immunity by interacting with multiple proteins in the Rac1 immune complex |
| Subcellular localization as per literature |
Cytoplasm |
| Cells used for localization experiment |
rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
18723578 |
| Reference of localization |
http://www.plantcell.org/content/plantcell/20/8/2265.full.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.084 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os01g49290.1 protein
MAGAQESLVLAGVMHGHNDVVTAIATPIDNSPFIVSSSRDKSLLVWDLTNPVQNVGEGAGASEYGVPFRRLTGHSHFVQDVVLSSDGQFALSGSWDGELR
LWDLSTGVTTRRFVGHDKDVLSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTIGGDLGGGEGHNGWVSCVRFSPNTFQPTIVSGSWDRTVKVWNLTNCK
LRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQMLY
CTSLNWSADGSTLYAGYTDGTIRIYKISGFSYAG |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleolus |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| Presence of Splice variants |
No |
