| RGAP LOCUS ID |
LOC_Os01g48690 |
| RAP-DB ID |
Os01g0678600 |
| Function |
ribosomal protein rpS20, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
14 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.562 |
3) NUCPRED
Prediction
|
| localization |
Nuclear |
| score |
0.83 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.8 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
ASL1 |
| Function assigned as per literature |
ASL1 plays an important role in chloroplast development in rice |
| Subcellular localization as per literature |
chloroplast |
| Cells used for localization experiment |
tobacco cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
23979931 |
| Reference of localization |
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3789801/pdf/1769.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.204 |
| NLS score |
1.05 |
| Protein Sequence |
>LOC_Os01g48690.1 protein
MATATSTLFSLSSLSASLPSPAQPAPASLSLRAVSPRARLSASYAAFPIGGIGAWAAATPASSGRWRRRGLEVVCEAAKTGTATGRRPDSVKKRERQNDR
HRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISEAYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWYVPNAEPAATS |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
ribosome |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
RNA binding |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
translation |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
structural molecule activity |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
