LOC_Os01g48440

Expression Profile

RGAP LOCUS ID LOC_Os01g48440
RAP-DB ID Os01g0675500
Function glycosyltransferase family 43 protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 3.5

2) CELLO Prediction
localization Chloroplast
score 1.889

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Nuclear
score 89.57
confidence value 0.61
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIRX9L
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.29
Protein Sequence >LOC_Os01g48440.1 protein
MSRRNAGAMQREGSVKDWEEFDPSPSPKLAYSQSYVAMRGLLTSVASLDLVLMSSSLKSAWAAISSHKHARSLERSRSKGMSLKRAMLQLLVCFMVGIFI
GFTPPFSVDLPGKIASENGRLPFDGDAIDRRQMVERQGTKLEPFVAEAESEASSEPQVEEGPPVPAMLDDEADFVEASPIVHSVNDSGIVVRKHLIIITT
TSVRPHQAYYLNRLAHVLKDVPPPLLWIVAEWPYQSRETAEILRSSGIMYRHLICNRNTTNIRKIVVCQKNNAIFHIKKHRLDGIVHFADEERAYSADLF
EEMRKIRRFGTWPVAIHVGTKYRVVLEGPVCKGNQVTGWHTNQRRGVSRRFPIGFSGFAFNSTILWDPQRWNSPTLESIIVHSGGRGGLQESRFIEKLVE
DESQMEGLGDNCTRVMVWNFELEPPQVNYPIGWLLQRNLDAVVPIT

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Biological Process
GO Term carbohydrate metabolic process
4
GO Category Molecular Function
GO Term transferase activity
5
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
6
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES