LOC_Os01g48380

Expression Profile

RGAP LOCUS ID LOC_Os01g48380
RAP-DB ID Os01g0674700
Function PPR repeat domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10

2) CELLO Prediction
localization Nuclear
score 3.877

3) NUCPRED Prediction
localization Nuclear
score 0.82

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.56
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ALS3
Function assigned as per literature The ASL3 gene encoded a novel chloroplast-targeted PPR protein with 10 tandem PPR motifs in rice. Disruption of the ASL3 would lead to a defective chloroplast and seedling lethality, and affected expression levels of genes associated with chloroplast development and photosynthesis at early leaf stage of rice
Subcellular localization as per literature chloroplasts
Cells used for localization experiment tobacco cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25859292
Reference of localization https://thericejournal.springeropen.com/articles/10.1186/s12284-015-0050-9
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 4
Number of Bipartite 3
Basic residues % 0.157
NLS score 3.52
Protein Sequence >LOC_Os01g48380.1 protein
MAAPPPSATVGLIPNLAGRGVLLPASAPDSSACHGFVVPTRRRRRVSVAPFGWGLARRGRVSDARADGFGAMCAVAGGEAGPGSSELRHVEKELTFSPTF
TDYVKIMESVKLDRSKSLESTESDGRSSRRRFTGDGDAPVVRRGDERSGDGRSTSFDRQKGSQRNRGDVNERSMANNDIQNNSIRLVEKKKPGDVEKRRG
RQGKVDEYVQRRIVRGEISEDEGNVDKNERKQFTLQLKMKDTRGSMVAHQSERNMHVQSNARKGLQRQSTSMVSHISSPSNSRIILENTKSLVKRGKENF
SSPARSIYENNFKYPRERKFTNYDVNADDKFQRYQQTTENSGRGVVVGRFGEGDIDYNKATVSKRYGNRQATSGHDGHPTVSLKRGKPEAIRMQRGENVQ
TGKFIRRDAKAIDLDDRAAFKTFEVFTDVRNRPRVLQMELEDRIQKLASRLNATDVNTPEWKFSKMIHDAKIKFSDHSILRVVQILGRYGNWKRVLQVVE
WLQSRERFKSYKSRYIYTTVLDVLGKAKRPFEALNVFYTMLDQLSSYPDMAAYHCIAVTLGQSGLVKELFDVIDRMRSPPKKFKLSPIQNWDPRLEPDLI
VYNAVLNACVQQKQWEGAFWVLQQLKEKNIRPTNTTYGLVMEVMLVCGKYNLVYEFFNKVEKTSIPGTLNYKVLINALWREGKIDEAVMAVKGMESRGIV
GSASLYYDLARCLCSGGRCKEALLQVEKICKVANKPLVVTYTGLIQTCIDNGSMENAKYIFDEMCKYCSPNNITCNIMLKSYTEHGMFEDAKDLLENILS
GRIRSKVESSQKAIADKFTFNIFMEACAEAKRWNDFEYAFRKMLSSGYHFDERRHLRMVLDAYRNGKEQLLEDVWDYMCQYGRVPPAPMIMERFCLKLRQ
GDTVAAMSCINTFQESKIRNVSSMSWFNLLNRNGDRLKEDIIIKLLHELNNLVSSSGHSDSLYQNIISSCTEFLSVSTSVEKASSDQQMLPCTS

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Molecular Function
GO Term binding
4
GO Category Biological Process
GO Term reproduction
5
GO Category Biological Process
GO Term post-embryonic development
6
GO Category Biological Process
GO Term embryo development
Presence of Splice variants YES