LOC_Os01g48280

Expression Profile

RGAP LOCUS ID LOC_Os01g48280
RAP-DB ID Os01g0673600
Function ubiquitin-conjugating enzyme, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 6

2) CELLO Prediction
localization Mitochondrial
score 1.066

3) NUCPRED Prediction
localization Non Nuclear
score 0.19

4) Y-Loc Prediction
localization Cytoplasm
score 85
confidence value 0.28
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsUBC13
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.118
NLS score -0.47
Protein Sequence >LOC_Os01g48280.1 protein
MANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPAQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPA
LQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKANEAEAVETAKEWTRLYASGA

GO Analysis
1
GO Category Biological Process
GO Term protein modification process
2
GO Category Biological Process
GO Term biological_process
3
GO Category Molecular Function
GO Term catalytic activity
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term protein metabolic process
6
GO Category Biological Process
GO Term catabolic process
7
GO Category Biological Process
GO Term cellular process
8
GO Category Cellular comBiological Processonent
GO Term cytosol
9
GO Category Cellular comBiological Processonent
GO Term intracellular
10
GO Category Cellular comBiological Processonent
GO Term plasma membrane
11
GO Category Biological Process
GO Term anatomical structure morphogenesis
12
GO Category Biological Process
GO Term cell differentiation
13
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants YES