LOC_Os01g48060

Expression Profile

RGAP LOCUS ID LOC_Os01g48060
RAP-DB ID Os01g0670800
Function auxin response factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 2.932

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Nuclear
score 99.9
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category ARF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsETT2|OsETTIN2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.108
NLS score 0.28
Protein Sequence >LOC_Os01g48060.1 protein
MVGIDLNTVEEEEDEEEGGATGTVTAPAEARAGGAVCLELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAAVPPHVFCRVVDVSLHADAAT
DEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFR
HIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHAVAVKSIFHIYYNPSCTHRLSQSEF
IIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADPMWHGSKWKCLVVKWDDDVECRRPNGVSPWEIELSGSVSGSHLSTPHSKRLKSC
FPQVNPDIVLPNGSVSSDFAESARFHKVLQGQELLGLKTRDGTVNTASQATEARNFQYTDERSCSINMSNNILGVPRLGVKTPSGNPGFSYHCSGFGESQ
RFQEVLQGQEVFRPYRGGTLSDACIRGSGFRQPDGNHAPGAAFKWLAPQGCDHHGITTSVLPQASSPSSVLMFPQTSSKMPGLEYIYGCLDRNENSRHFK
IGPTQDMTRTDQTLRLWPHLISGKVLDECTRNEKLHSPVSGAEHESNNKCLNTNGCKIFGISLTEKAQAGDEVDCGNASYHSRLQSLKPQMPKSLGSSCA
TVHEQRPVVGRVVDISAVNTMI

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term cell differentiation
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term metabolic process
10
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES