LOC_Os01g47900

Expression Profile

RGAP LOCUS ID LOC_Os01g47900
RAP-DB ID Os01g0669100
Function S-locus-like receptor protein kinase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 7.5

2) CELLO Prediction
localization PlasmaMembrane
score 1.973

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.45
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLSK1
Function assigned as per literature OsLSK1 affects panicle architecture and grain yield in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Arabidopsis leaf protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26428067
Reference of localization https://academic.oup.com/jxb/article/66/22/7197/2893281
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.29
Protein Sequence >LOC_Os01g47900.1 protein
MAGLVIGYLAVQLSLMSLLLCPSSSTAQHTLGRSSMSVEDHARPFLVSTDGSFSCGFLEAGDNAFTFSVWFTADPNRTAVWSANRDAPVNGRGSRVSFSR
DGELALADTNGTTVWSSKTTAGTGNRRGLTVSLRDTGNLVVGDPSTGLAVWQSFEWPTDTLLPSQRFTKQTKLVAGYFSLYFDNDNVLRMLYDGPEIASI
YWPLPGLTVFENGRTNYNSTRIAILDDAGVFLSSDQTKAEATDLGLGIKRRITIEQDGNLRMYSLNASTGGWAVTWSALKQPCQAHGLCGKNGLCEYLPS
LRCSCLPGYEMVDRRDWRRGCKPTFPVGNCSQGSAPPPSPATAPPQFKFIEVAQTDFFGFDLGYTESITFKQCRDQCMNNCQCTAFSYRLDGRGKCYPKG
TLFNGFTSANFPGSIYLKVPLDFNASSPRVSAQRAAGLACGANVTVVTVSADVYGMAPGSNGQWTYFFVFAGVLGVLDILFIATGWWFLSSKQSIPSSLQ
AGYKMVMTSQFRRFTYRELKGATANFKEELGRGGSGAVYRGVLDGGKVVAVKRLAVDVTMQGDEEFWSEMTVLGRINHINLVRIWGFCSERKHKLLVYEY
VENQSLDRHLFDASDGSGGKATTLAWSDRYKIALGTARGLAYLHHECLEWVIHCDVKPENILLTREFEAKIADFGLAKLSKRDGGAGVELTHMRGTSGYM
APEWALNLPINAKVDVYSFGIVLLEMVVGSRVADQRTEAGEPLQLPQITQALRHVVDSGDVMSLVDARLQGQFNPRQAMEMVRISLACMEERSCRPTMDD
IAKSLTAFDDEDEHPAYHS

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Molecular Function
GO Term carbohydrate binding
5
GO Category Molecular Function
GO Term kinase activity
6
GO Category Biological Process
GO Term protein modification process
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No