LOC_Os01g47690

Expression Profile

RGAP LOCUS ID LOC_Os01g47690
RAP-DB ID Os01g0667200
Function metallo-beta-lactamase family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Mitochondrial
score 2.855

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.62
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGLYII1|OsETHE1
Function assigned as per literature OsETHE1 has role in stress response
Subcellular localization as per literature Mitochondria
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24410953
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/ppl.12147
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.118
NLS score -0.47
Protein Sequence >LOC_Os01g47690.1 protein
MVALLRSCRRLIPHLSACAAAAPSSSSSCAPRARPISRGLRLLPVVLAMAGYSSGSAAEGRRLLFRQLFEKESSTYTYLLADVGDPEKPAVLIDPVDRTV
DRDLNLIKELGLKLVYAMNTHVHADHVTGTGLIKTKLPGVKSVIAKVSKAKADHFIEHGDKIYFGNLFLEVRSTPGHTAGCVTYVTGEGDDQPSPRMAFT
GDALLIRACGRTDFQGGSSDELYESVHSQIFTLPKDTLLYPGHDYKGFTVSTVEEEVAYNARLTKDKETFKKIMDNLNLAYPKMIDVAVPANLLCGIQDP
PPSKV

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term hydrolase activity
3
GO Category Biological Process
GO Term catabolic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term response to abiotic stimulus
Presence of Splice variants YES