LOC_Os01g46926

Expression Profile

RGAP LOCUS ID LOC_Os01g46926
RAP-DB ID Os01g0658400
Function ubiquitin-conjugating enzyme, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7.5

2) CELLO Prediction
localization Nuclear
score 1.702

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Cytoplasm
score 94
confidence value 0.68
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsUBC5a
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.47
Protein Sequence >LOC_Os01g46926.1 protein
MASKRIQKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKDQWSPALTIS
KVLLSICSLLTDPNPDDPLVPEIAHMYKTDRHKYENTARTWTQRYAM

GO Analysis
1
GO Category Biological Process
GO Term protein metabolic process
2
GO Category Biological Process
GO Term catabolic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES