LOC_Os01g45550

Expression Profile

RGAP LOCUS ID LOC_Os01g45550
RAP-DB ID Os01g0643300
Function auxin efflux carrier component, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 2.946

3) NUCPRED Prediction
localization Non Nuclear
score 0.55

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.11
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPIN3t
Function assigned as per literature OsPIN3t is involved in the drought stress response and drought tolerance
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice root tip cells and tobacco epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22882529
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-313X.2012.05121.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.104
NLS score -0.16
Protein Sequence >LOC_Os01g45550.1 protein
MISGHDFYTVMAAVVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNLRFLAADTLQKLLVLAGLAAWSRLPSRTGAPR
LDWSITLFSLSTLPNTLVMGIPLLIAMYGPYSGSLMVQIVVLQCIIWYTLMLFLFEFRAARMLIADQFPDTAASIVSLHVDPDVVSLEGGHAETEAEVAA
DGRLHVTVRRSSVSRRSLLVTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHADFFAMVGGGPPPPTPAAVRGSSFGASELYSLQSSRGPTPRQSNFDEHSA
RPPKPPATTTGALNHDAKELHMFVWSSSASPVSEVSGLPVFSGGGGGGALDVGAKEIHMVIPADLPQNNGSGKEHEEYGAVALGGGGGGENFSFGGGKTV
DGAEAVDEEAALPDGLTKMGSSSTAELHPKVVDVDGPNAGGGAAGAGQYQMPPASVMTRLILIMVWRKLIRNPNTYSSLLGLAWSLVAFRIVHGAAAQHH
RVWQISRRRLHGRPLPRGPCRHGRRVNRHRTPRDAPARRHCSGGSTTRDCAFCFCKRIQCPPGHPEHSGNFWHANSSSNHIAVLHPSWTMIKKAYGRSHI
KRKKWGQRERKKSDPVHLKQRMLICIACCRTLPMMTRQRSCYRAIYLCDICTRDNDRMYSNITDIRYVFC

GO Analysis
1
GO Category Biological Process
GO Term multicellular organismal development
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants YES