LOC_Os01g45190
| RGAP LOCUS ID | LOC_Os01g45190 |
| RAP-DB ID | Os01g0639100 |
| Function | DEAD-box ATP-dependent RNA helicase, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | cyto |
| score | 9 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 1.1 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.45 |
4) Y-Loc Prediction |
|
| localization | Cytoplasm |
| score | 88 |
| confidence value | 0.4 |
| Number Of Software Predicting Nucleus | 1 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OsRH2 |
| Function assigned as per literature | OsRH2 is a core component of the exon junction complex (EJC) and play critical roles in regulation of plant height, pollen, and seed development in rice |
| Subcellular localization as per literature | Nucleus and cytoplasm |
| Cells used for localization experiment | Onion epidermal cells |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 27071313 |
| Reference of localization | https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-016-0769-5 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 0 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.126 |
| NLS score | -0.47 |
| Protein Sequence | >LOC_Os01g45190.1 protein MAAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREV QALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRY LPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAM HGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNV ADLI |
GO Analysis |
|
| Presence of Splice variants | YES |