LOC_Os01g45070

Expression Profile

RGAP LOCUS ID LOC_Os01g45070
RAP-DB ID Os01g0637600
Function peptide deformylase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization Mitochondrial
score 1.449

3) NUCPRED Prediction
localization Non Nuclear
score 0.04

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.87
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPDF1B
Function assigned as per literature  OsPDF1B is essential for the development of chloroplast and perhaps mitochondria.
Subcellular localization as per literature chloroplasts and mitochondria
Cells used for localization experiment protoplasts isolated from Oc suspension cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 18718933
Reference of localization https://academic.oup.com/pcp/article/49/10/1536/1890287
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.134
NLS score -0.47
Protein Sequence >LOC_Os01g45070.1 protein
MAARLHLRLGPRLRGFASSFAPLLAAHPRALPLSRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNKRINTFDD
NLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKL
SGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRKDLISFSR

GO Analysis
1
GO Category Molecular Function
GO Term hydrolase activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term translation
4
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES