LOC_Os01g43610
| RGAP LOCUS ID | LOC_Os01g43610 | ||||
| RAP-DB ID | Os01g0625900 | ||||
| Function | DUF623 domain containing protein, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 14 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 4.551 | ||||
3) NUCPRED Prediction |
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| localization | Nuclear | ||||
| score | 0.92 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 50.56 | ||||
| confidence value | 0.13 | ||||
| Number Of Software Predicting Nucleus | 4 | ||||
| Seed Specific | No | ||||
| Transcription factor category | OFP | ||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsOFP2 | ||||
| Function assigned as per literature | Regulates vasculature development | ||||
| Subcellular localization as per literature | Nucleus and cytosol | ||||
| Cells used for localization experiment | onion (Allium cepa) epidermal cells | ||||
| NUCLEAR or Not Nuclear | NUCLEAR | ||||
| PMID | 26706069 | ||||
| Reference of localization | https://www.sciencedirect.com/science/article/pii/S0168945215300959?via%3Dihub | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 4 | ||||
| Number of PAT7 | 2 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.142 | ||||
| NLS score | 1.43 | ||||
| Protein Sequence | >LOC_Os01g43610.1 protein MHTPFVDKSPHRRLDGLGAGGWLKQRLAQILVRSTCTTNTTTTTTTTSSTAFVSLDKTNADTHQEPPPPPSPYFCTPCTYQRPKLDAPGRPRRRRRSASL VHISIDCTGGAGATSGRRSVHSDAPLLPYSSSLPTKDGRKQSRARRKARSSPSTSRRHCPSSSWGRARLPRGAPGQYSSSSSTVTDDELAPFSTDEEGGE EADTRTLFSSLSFSSDSTSEFYHTNSSSSLARKGHKNAPARRPPARRASARITSDPADAFRPVVSVAATKKQHNDMKKKEETAIKRQLGTDDDTAAGAGM AVVKRSSNPYADFRSSMVEMVVERRICSVPEMEELLGSYLSLNSPQHHPAILAAFEDVWEAVFGEE |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | No | ||||