LOC_Os01g43540

Expression Profile

RGAP LOCUS ID LOC_Os01g43540
RAP-DB ID Os01g0624500
Function suppressor of G2 allele of SKP1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Cytoplasmic
score 1.946

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Nuclear
score 62.6
confidence value 0.09
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSGT1
Function assigned as per literature OsSGT1 has role in basal disease resistance in rice
Subcellular localization as per literature OsSGT1 colocalize with OsRAR1 in nucleus and cytoplasm
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 18257679
Reference of localization https://apsjournals.apsnet.org/doi/10.1094/MPMI-21-3-0294
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.139
NLS score 0.04
Protein Sequence >LOC_Os01g43540.1 protein
MATAAASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANKAIELDPSMHKAYLRKGAACIRLEEYQTAKAALELG
YSFASGDSRFTRLMKECDERIAEELSEVPVKKAEDGAAAPSVASFVEEKDDAANMDNTPPMVEVKPKYRHDFYNSATEVVLTIFAKGVPAENVVVDFGEQ
MLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVLSTKVEIRLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQRPSYPSSKSKKDWDKLEAEVKKEEKE
EKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEGSPPDGMELKKWEY

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to biotic stimulus
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term response to endogenous stimulus
5
GO Category Biological Process
GO Term signal transduction
6
GO Category Biological Process
GO Term protein metabolic process
7
GO Category Biological Process
GO Term catabolic process
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Cellular comBiological Processonent
GO Term cytoplasm
10
GO Category Cellular comBiological Processonent
GO Term intracellular
11
GO Category Molecular Function
GO Term protein binding
12
GO Category Biological Process
GO Term cellular process
13
GO Category Biological Process
GO Term post-embryonic development
14
GO Category Cellular comBiological Processonent
GO Term cytosol
15
GO Category Biological Process
GO Term reproduction
16
GO Category Biological Process
GO Term embryo development
Presence of Splice variants No