LOC_Os01g42850

Expression Profile

RGAP LOCUS ID LOC_Os01g42850
RAP-DB ID Os01g0614900
Function ThiF family domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization Nuclear
score 1.068

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.25
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsATG7
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.1
NLS score -0.47
Protein Sequence >LOC_Os01g42850.1 protein
MAARAEAAAAAPRPLQAAAIGVCAETGFWDALRRLKLDVLGTDDSPIPITGYYTPRQYEKIASLFRICPESILPPSANSFGDRNNCPVPGTLLNTNNMRG
FQNLDRALLLKAEAKKILHDIKSGKVEENPALLLRFLVISFADLKNWKVYYNVAFPSLIFDSKITLLSLKLASQVLKQEEATSLSNAFTEWRKSSETTVV
PFFLINISPDSSATIRQLKDWKACQGNGQKLLFGFYDHGNRGFPGWALRNYIAFVSLRWKIEKVHFFCYREKRGRPDIQQSLVGEASFPAPHAGWDEPDY
VPEAIGWEGETAGKESKEMKPKEIDLSSINPASQDEEKQLMHLKLMGWRHFPVNLDKLAGVRCLLLGAGTLGCEVARLLMTWGVRKLTVVDDGCVSMSDL
VKQSLYTDKDCGVPRVTAIVPHLKERCSAVEVEGIQMGIPKLEYNISASKISSITDDCKRLQTLVDSNDVVFLLNETWEGMWLPTLLCADKNKIAITVLL
GYDNYLVMRHGAGPGTKSGGMDEGIAQIENLSTQDALGRQRLGCCFCSDTTSLVNSDHNGALDQQSAVILPGLTSVASGKAVELFARMLHHPDEIHAPGD
IAGTDTEHQLGLLPHQMQGSLSKCVLSTVLCNSSSNCIACSNAVLSEYRRRGFDFVTQAITCPTYLKDLTGISDLKKPFASKISASIPVSKTSASIPVNL
EKLSSARCLLLGAGTLGCDVARILMDCGVRKLTVVDSGRVVVSNLARQSLYTSDDRDSPKASAILGRLKERCPSVDAKGIKMEIPMPGHPVSPNEAVSVL
EDCKRLQELVSSHDAVFLLTDTRESRWLPTLLCANENKIAITAALGYDSYLVMRHGAGPGTNCGSPDVVAAADTLSAEDVLGRQRLGCYFCNDVVAPVDS
VSNRTLDQQCTVTRPGLSSITSGCAADLFTRMLHHPDGIHAPGEIAGTSSEGPLGLLPHQIRGSLSQYNLLTLLGYSSSNCTACSNAVLSEYHRRGMDFV
MQVINEPTYLEDLTGLTDLMKSAAYSQVEWIDEVDDDDEMDI

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to biotic stimulus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Molecular Function
GO Term catalytic activity
7
GO Category Cellular comBiological Processonent
GO Term cytosol
8
GO Category Biological Process
GO Term catabolic process
9
GO Category Biological Process
GO Term cellular process
10
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES