LOC_Os01g42700
| RGAP LOCUS ID | LOC_Os01g42700 | ||||
| RAP-DB ID | Os01g0612600 | ||||
| Function | expressed protein | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 14 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 3.934 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.61 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 51.3 | ||||
| confidence value | 0.12 | ||||
| Number Of Software Predicting Nucleus | 3 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | SIDP361 | ||||
| Function assigned as per literature | SIDP361 has high potential as a tool for genetically improving salt tolerance in rice | ||||
| Subcellular localization as per literature | cytoplasm | ||||
| Cells used for localization experiment | rice root cells | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | not available | ||||
| Reference of localization | https://link.springer.com/article/10.1007/s12374-016-0180-7 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 1 | ||||
| Number of PAT7 | 1 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.144 | ||||
| NLS score | -0.03 | ||||
| Protein Sequence | >LOC_Os01g42700.2 protein MPKDRSTRAVSYERRRSRVSPYPSNGKGCARRSEESAAAAAAAAAKQAAEWEDVRCPVCMDHPHNAVLLVCSSHEKGCRPFMCDTSYRHSNCFDQYRKAS KESSKDSGASAAAAPECSECQQPIKLSCPLCRGPVSHWTKDYDARKYLNVKVRACTKESCEFRGAYGQLRRHARENHPTVRPTQVDPERQRDWHRMEQQR DLGDLFSMLRSGLSAREDGIGVSEGEEDISERALHSPSITMVFIVRTGRSILHYREAFPGHHRRRTILLLGEAFGRESSPLGGASGSGDGDTTARENDEG DDDVTLSTEASAGSQHDGEVDGDPAH |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | YES | ||||