LOC_Os01g42650

Expression Profile

RGAP LOCUS ID LOC_Os01g42650
RAP-DB ID Os01g0612200
Function cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 9

2) CELLO Prediction
localization Chloroplast
score 2.206

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.66
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) coxVb|COX5b
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.107
NLS score -0.47
Protein Sequence >LOC_Os01g42650.1 protein
MWRRLQTLAPALRRAASASASAAASGAAGPASLARAAPLSTAAAAAFRRTSPLLSGDKPATVEDVMPIATGLEREELAAELKGEKRFDMDPPVGPFGTKE
APAVIESYYNKRIVGCPGGEGEDEHDVVWFWLKKDEPHECPVCSQYFVLKVIGDGGDPDGHDDDDEHHH

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term mitochondrion
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Cellular comBiological Processonent
GO Term plastid
4
GO Category Cellular comBiological Processonent
GO Term thylakoid
5
GO Category Biological Process
GO Term transport
6
GO Category Biological Process
GO Term cellular process
7
GO Category Molecular Function
GO Term catalytic activity
8
GO Category Molecular Function
GO Term transporter activity
9
GO Category Biological Process
GO Term metabolic process
10
GO Category Molecular Function
GO Term binding
Presence of Splice variants No