LOC_Os01g42630

Expression Profile

RGAP LOCUS ID LOC_Os01g42630
RAP-DB ID Os01g0612000
Function C-5 cytosine-specific DNA methylase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Nuclear
score 1.282

3) NUCPRED Prediction
localization Non Nuclear
score 0.15

4) Y-Loc Prediction
localization Cytoplasm
score 34
confidence value 0.03
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DNMT2
Function assigned as per literature
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 22943564
Reference of localization https://febs.onlinelibrary.wiley.com/doi/epdf/10.1111/febs.12002
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.075
NLS score -0.47
Protein Sequence >LOC_Os01g42630.1 protein
METAVPWKVLEFYSGIGGMGFCATCPPPQRYSLAASGARAEVVEAFDINDVANDVYELNFGHRPYQGNIQTLTASDLDKYKAQAWLLSPPCQPYTRQGLQ
KHSADARAFSFIKILNLMKNMCFPPQMLFVENVVGFEVSDTHDQLIEVLSDLNFNTQEFILSPLQFGIPYSRPRYFCLAKREPVSFQNPSDNSKLLRTPT
FLTLVRAGHNRCNPDEDELELVCKPISDFLETISLNVADQDSSVNGSDGCTPSGIISQDYVVPLNLIERWGSAMGIFFFS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
4
GO Category Biological Process
GO Term DNA metabolic process
Presence of Splice variants YES