LOC_Os01g42260

Expression Profile

RGAP LOCUS ID LOC_Os01g42260
RAP-DB ID Os01g0607400
Function transcriptional corepressor LEUNIG, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.128

3) NUCPRED Prediction
localization Nuclear
score 0.93

4) Y-Loc Prediction
localization Nuclear
score 99.33
confidence value 0.91
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category LUG

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLUGL
Function assigned as per literature OsLUGL affects auxin level thus influencing floral development in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 31521225
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945219305059
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.087
NLS score 0.4
Protein Sequence >LOC_Os01g42260.1 protein
MSQTNWEADKMLDVYIYDYFMKRNLQATAKAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQHMKAREQQQQQQQQPPQQ
RQQQPQHIQMQQMLLQRAAQQQQQQQQQQQQQQQQQQQQQQQQQQQRRDGTHLLNGTASGLPGNNPLMRQNQSTANVMATKMYEERLKLPSQRDGLDEVS
IKQRYGENAGQLLDSNEALLKASASGQSSGQILHGTVGGLSGSLQQVQSRSPQIPGPAQSIKTEMNPILTPRSAGPEGSFIGVQGSNQAGNNLTLKGWPL
TGLEQLRSGLLQQKSFVQNQQQLQQQIHFLTPQQQQQLMLQAQQNMASPTSSDVDSRRLRMMLNNRNVGQTNSGGDIIPNIGSPSLSGGDVDILIKKKIA
QQQQLLQQQSNSQQHPQLQQPAVSSQQSQSSNQFLQQEKPGIGTMPVDGGMPNSFGGVDQTTKKRKKPGSSSGRANSSGTANTAGPSPSSAPSTPSTHTP
GDAMSMPQLQQNGGSAKPLVMFGSDGAGSLTSPANALADVDRLLEDGSLDENVESFLSQDDMDPRDSLGRSMDASKGFGFAEVAKARASATKVTCCHFSS
DGKLLATGGHDKKVLLWCTEPALKPTSSLEEHSALITDVRFSPSMSRLATSSFDKTVRVWDADNTSYSLRTFTGHSASVMSLDFHPNKEDMICSCDGDGE
VRSWSINNGSCLTFVKVFKGGATQMRFQPQKGKYLAAASEKAIYILDGETQLACRNPLQGHTKNIHSLCWDSTGDNLASVSEDSVRIWSFAPGHDGEFVN
ELSCSGNKFQSCVFHPSYPYLLVIGCYESLELWDIREKNAMTVHSAHDGLVAALAASSATGKVASVSHDRFVKLWK

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term flower development
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term reproduction
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants YES