| RGAP LOCUS ID |
LOC_Os01g40670 |
| RAP-DB ID |
Os01g0589300 |
| Function |
single myb histone, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
mito |
| score |
5 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.777 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.23 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
98.67 |
| confidence value |
0.83 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
MYB_related |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsTRBF1 |
| Function assigned as per literature |
OsTRBF1 plays roles in the function and structure of telomeres in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Arabidopsis protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
19527719 |
| Reference of localization |
https://febs.onlinelibrary.wiley.com/doi/pdf/10.1016/j.febslet.2009.06.021 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.153 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os01g40670.1 protein
MGAPKQRWTAEEEAALKAGVAKHGTGKWRTILRDPEFTALLRLRSNVDLKDKWRNLSVTAGGYGSRERARVALKGGKRGPKALAEPMDADEKNPDIDDNA
IIDAQPLAVVVEPMQLESTPEKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEEQYWPPEDFQRLLSTKLKALVATGKLIKVNQKYRIAPSSNSSGG
KSIKVYSTGEMNIENNNVRQLSKPQVDAELDKMKSMSKEEAASFAARAVAEAEAAIAEAEEAARAAEAAEAEADAAKAFLDAVVTTMQNRNHASAMLRAC |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
YES |
