LOC_Os01g39960

Expression Profile

RGAP LOCUS ID LOC_Os01g39960
RAP-DB ID Os01g0581300
Function lycopene epsilon cyclase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 1.781

3) NUCPRED Prediction
localization Non Nuclear
score 0.25

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.7
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLCYe|OsLCYepsilon
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.115
NLS score 0.55
Protein Sequence >LOC_Os01g39960.1 protein
MEFSGGATVSAPFGCCRAAWGAAAAGAGAEGRSRRVVPRAVEPRRRGRWMVRCVATEKHKDAAARRGGVEVEFADEEDYVKGGGGELLYVQMQASKSMDS
QSKISSKLLPIPDENSVLDLVIIGCGPAGLSLAAESAKKGLNVGLIGPDLPFTNNYGVWEDEFKDLGLESCIEHVWKDTIVYLDGNKPIMIGRAYGRVHR
DLLHEELLRRCYDAGVTYLSSKVDKIMESPDGHRVVCCEGDREVLCRLAIVASGAASGRLLEYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDC
FKDKFSHPEQGNPTFLYAMPMSSTRIFFEETCLASKEAMPFDLLKKRLMSRLDAMGVHIRKVYEEEWSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYS
VVRSLSEAPRYASVISDILRNRVYPGEYLPGTSQSSSPSMLAWRTLWPQERKRQRSFFLFGLALIIQLNNEGIQTFFETFFRLPKWMWRGFLGSTLSSVD
LILFAFYMFTIAPNQMRMNLVRHLLSDPTGSTMIKTYLTL

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term lipid metabolic process
4
GO Category Biological Process
GO Term generation of precursor metabolites and energy
5
GO Category Biological Process
GO Term photosynthesis
6
GO Category Molecular Function
GO Term catalytic activity
7
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No