| RGAP LOCUS ID |
LOC_Os01g39630 |
| RAP-DB ID |
Os01g0578000 |
| Function |
DNA repair protein Rad51, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
1.585 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.01 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
95.67 |
| confidence value |
0.23 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
RAD51C |
| Function assigned as per literature |
OsRAD51C is essential for double-strand break repair in rice meiosis |
| Subcellular localization as per literature |
Nucleus ( Meiotic Chromosomes) |
| Cells used for localization experiment |
Pollen mother cells (PMCs) |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
24847337 |
| Reference of localization |
https://www.frontiersin.org/articles/10.3389/fpls.2014.00167/full |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.1 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os01g39630.1 protein
MEIADLPIATSHRANLLAAGYSSLAALSAASPPRLARDLSIEVHEAEEILKVAVGANKSKGADGPSTSSVLKGVQNAWDMLSDEQSRRHINTGSADLNNI
LGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYIDTEGSFMVERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYF
RICSYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDDMALRTRVLSGLSLKLMKLSKAYNLAVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTN
RLILYWNGNERYGFLDKSPSLPVASAPYAVTVKGVRDAVNSNSKRVRVM |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cellular_component |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
DNA metabolic process |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cell cycle |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| Presence of Splice variants |
YES |
