LOC_Os01g39270

Expression Profile

RGAP LOCUS ID LOC_Os01g39270
RAP-DB ID Os01g0574600
Function NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 3.749

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.77
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGLYR2
Function assigned as per literature OsGLYR2 are involved in detoxifying harmful aldehydes, thereby preserving plant health during exposure to various abiotic stresses
Subcellular localization as per literature Plastid and mitochondria
Cells used for localization experiment tobacco BY-2 cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28484477
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.00601/full#F3
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.091
NLS score -0.47
Protein Sequence >LOC_Os01g39270.1 protein
MAAMAAASLLCARAAAAAPTLRLRGGGRGARLVFSCSASSSSPSGEGGFSGKVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSP
ADVASSCDVTFAMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLEAPVSGSKKPAEDGLLIFLTAGDESLYNRVASLL
DVMGKSRFFLGDVGKGADMKLVVNMVMGSMMVSFSEGLLLSEKVGLDPNTLVEVISQGAISAPMFSLKGPSMVKAAYPTAFPLKHQQKDLRLALALAESV
SQSIPTVAAANELYKVAKSLGLADQDFSAVIEALKAKEQSK

GO Analysis
1
GO Category Biological Process
GO Term carbohydrate metabolic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term catabolic process
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No