LOC_Os01g37870

Expression Profile

RGAP LOCUS ID LOC_Os01g37870
RAP-DB ID Os01g0559500
Function PPR repeat domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 1.312

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.64
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WSL
Function assigned as per literature WSL is involved in splicing and affects chloroplast development and abiotic stress response in Rice
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24821718
Reference of localization https://www.sciencedirect.com/science/article/pii/S1674205214609369
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.128
NLS score -0.47
Protein Sequence >LOC_Os01g37870.4 protein
MEAAASLPLPASRFLSPPPHPTPAAAAAAACCSRRNISCARAAPRALEAPQASRPPPRPSPRRSAVAEVKAAPDPVAALTRFEDVLQTQDCNIILRHYGE
TRRWDELSKVFGWMQEHDMLNIASYSSYFKYLGLSRNPARALQVYGAIRENPTRIHVSVCNSVLGCLVKNGRFDSSFKLYDEMIREGLSPDLFTYSTLLS
GCMKLKQGYTKAMELVNELNSRGFQMDSVIYGTLLAICASHNCCEKAEEYFQKMKDEGHKPNLFHYSSLLNAYSENANYEKADLLMKDLRSSGLTPNKVI
LTTLLKVYSKGGLFEKARELLTELEASGFAQDEMPYCILIDGLVKERKIWEAMILFNDMKEKGVKSDGYAFSIMISALHRGGYREESKQLAKEFEAKNAT
YDLVMLNTSLRAYCSTNDMESVMIMLRKMDESNISPDAITFNTLIRYFCMAKVYHLAYKTIQDMHTKGHQLNEELCSEIMMQLGEAGFPSEAFSVYNMLR
YGKRTVCKSLHEKVLCILVPAGLLKDAYVVVKDNSEFISRRSLGNFARSFMASGNINLINDVMKAVHRSGWRISQDIFGKAIQRYIQKPDKKQLLLCLLD
WMTGQGYSVDSSSRNLLLRNAQLFGQKQLIAEILSKQQGASRITSQRHQK

GO Analysis
1
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES