| RGAP LOCUS ID |
LOC_Os01g37690 |
| RAP-DB ID |
Os01g0557500 |
| Function |
sodium/calcium exchanger protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
plas |
| score |
8 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
4.617 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.04 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.03 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsCAX1a |
| Function assigned as per literature |
OsCAX1a transports Ca(2+) into vacuoles and is involved in Ca(2+) homeostasis in cells that suffer from high concentrations of Ca(2+) |
| Subcellular localization as per literature |
vacuolar membrane |
| Cells used for localization experiment |
onion epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
16275657 |
| Reference of localization |
https://academic.oup.com/pcp/article/47/1/96/1867571 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.062 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os01g37690.1 protein
MEAAAAMEAGRKLAARHPHGRSRTAHNMSSSSLRKKSDAALVRKVPVAPLRPLLANLQEVFLATKLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPL
AERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVSTALLFLAVLC
HSAPLLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFFQLKTHRQLFEPQEVDGGDAGDDDEEPALGFASALFWLALMTAVISVLSEYVVG
TIEPTSQSWGLSVSFISIILLPIVGNAAEHAGAIIFALKNKLDITLGVALGSATQISMFVVPLSVLVAWIMGVQMDLDFKLLETGSLFMAVLVTAFTLQD
GTSHYLKGILLLLCYIVIGACFFVARQPAGHANSNGALLDVPTGSMSVQAA |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
cellular homeostasis |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| Presence of Splice variants |
YES |
