LOC_Os01g32350

Expression Profile

RGAP LOCUS ID LOC_Os01g32350
RAP-DB ID Os01g0507900
Function OsClp2 - Putative Clp protease homologue, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Chloroplast
score 3.073

3) NUCPRED Prediction
localization Non Nuclear
score 0.27

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.93
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsClpP3
Function assigned as per literature
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 23803583
Reference of localization http://www.plantphysiol.org/content/162/4/1867.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.121
NLS score 0.04
Protein Sequence >LOC_Os01g32350.1 protein
MEAAAAMAALPASPCSSSSSPSSLFLAPNPCCWKAAPRATVRASASAARRTLSSAWELPGPSAARPAARKPRLEELDTTNMLLRQRIVFLGSPVDDMSAD
LIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGLQIRE
MMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDEGKPGLVAPLAGAVPPPKSRVWYLWNASGPTRKIMKNLPSEEKLIQNGNGS
ASGDDGKFKEISTA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term plastid
2
GO Category Molecular Function
GO Term hydrolase activity
3
GO Category Biological Process
GO Term protein metabolic process
4
GO Category Cellular comBiological Processonent
GO Term thylakoid
Presence of Splice variants YES