LOC_Os01g31110

Expression Profile

RGAP LOCUS ID LOC_Os01g31110
RAP-DB ID Os01g0495900
Function CRS2-associated factor 1, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11.5

2) CELLO Prediction
localization Nuclear
score 3.671

3) NUCPRED Prediction
localization Non Nuclear
score 0.86

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.13
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCAF1
Function assigned as per literature OsCAF1 functions in the regulation of rice chloroplast development.
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31500108
Reference of localization https://www.mdpi.com/1422-0067/20/18/4386/htm
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.141
NLS score 1.09
Protein Sequence >LOC_Os01g31110.1 protein
MATSHLTSRSLLVQAQYPISRLPSNLRLSLSHHKQPAAVAKRRRAPAPSHPAFSSVIRGRPKKVPIPENGEPAAGVRVTERGLAYHLDGAPFEFQYSYTE
TPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPGKKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKT
KRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIP
DGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLPPLEEN
DFKVASDQILNSKEAGSGSALTPIELVNNATSLKKCNLIEGAEKLEDSMKSSFENGMILGSACGNPGVCNSEGIDGTESSADAPIEFSPSNSARDLDPSQ
TSTLYCQSSLLDKSENGELIEMYPDRCGNSEQSPDVPEALTCLMGSSDEIHELETMRRNCKHLNGSDGVNSDSIVPSYMEGILLLFKQAIDSGMALVLNE
NEFADANYVYQKSVAFTKTAPRYLVLRHTPRKSHGTQKTEPAKNVRINKHLEEHKVSDHVKKKEIVMGGSRMQRNDHAREFLSDVVPQGTLRVDELAKLL
A

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No