LOC_Os01g29840

Expression Profile

RGAP LOCUS ID LOC_Os01g29840
RAP-DB ID Os01g0393100
Function no apical meristem protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 8

2) CELLO Prediction
localization Nuclear
score 3.448

3) NUCPRED Prediction
localization Non Nuclear
score 0.43

4) Y-Loc Prediction
localization Cytoplasm
score 60
confidence value 0.88
Number Of Software Predicting Nucleus 1
Seed Specific Yes
Transcription factor category NAC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ONAC026
Function assigned as per literature
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 27872632
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2016.01638/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.09
NLS score -0.47
Protein Sequence >LOC_Os01g29840.1 protein
MGEQQQQVERQPDLPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLPGKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKAT
GKDKEIFRNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRLADASPPQPPPPPSSAEPPRQDDWAVCRIFHKSSGIKKPVQVPMQMPMQMQMPVAHQVP
AANYQQQMAMASASIIQVPMQMQMPSMSDQLQMLDDFSTGSLMAPPPPPPSYSTLPGFPLQINGGAQQFVGNPSMYYQQQQQQQQQQMDMAAGGFVVSEP
SSLVVSPQDAADQNNAADISSVACNMDATIWKY

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
6
GO Category Cellular comBiological Processonent
GO Term cytoplasm
Presence of Splice variants No