LOC_Os01g28840

Expression Profile

RGAP LOCUS ID LOC_Os01g28840
RAP-DB ID Os01g0385400
Function C4-dicarboxylate transporter/malic acid transport protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization E.R.
score 5.5

2) CELLO Prediction
localization PlasmaMembrane
score 4.319

3) NUCPRED Prediction
localization Non Nuclear
score 0.08

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.18
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SLAC7
Function assigned as per literature SLAC7 is essential for maintaining the chloroplast stability in rice
Subcellular localization as per literature plasma membrane
Cells used for localization experiment onion epidermal cells.
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25739330
Reference of localization https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5029597/
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.094
NLS score 0.02
Protein Sequence >LOC_Os01g28840.1 protein
MEANGVIPDVMMPSLLADVEVSHLAGFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPLDSPFQAPGYRSVQPVSISLPASPTGFGVPV
ALPIAVGDAGEPADLRRQAMSNAARDAEEQQLAAQGKGSNNNVRFVQPDKVVFRSQPIPGGKPARRAASNRGGRMMSRDRRYDSFKTWSGKLERQLTHLA
GAGPEVPEEEEDGCDGDAISSHHTKSMPQVDRFFAALEGPELDKLRSSEELVLPSDKTWPFLLRFPVSAFGICLGVSSQAILWKTVATSTPTRFLHVTTK
VNLVLWCVSLALMCVIAAIYACKVVFFFEAVRREYYHPIRVNFFFAPWIACLFLAIGVPPSVATELPRWLWYALMTPILCMELKIYGQWMSGGQRRLSKV
ANPSNHLSVVGNFVGALLGASMGLKEGPVFFFSVGLAHYTVLFVTLYQRLPTNETLPKELHPVFFLFVAAPSVACMAWAKITGEFGLGSRVAYFIAMFLY
ASLAVRINFFRGFRFSLAWWAYTFPMTGAAIASIRYSTEVDNAFTKALCVALSVLAMLTVLALLATTIVHGFVLRNLFPNDISIAITERKVKPIVELHEM
LGSNDSAAGRSNDDIEAGVATVESS

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Biological Process
GO Term cellular homeostasis
4
GO Category Cellular comBiological Processonent
GO Term plasma membrane
5
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No